This web server offers tools to analyse RNAseq data collected by TCGA. The analyses that are made available use clinical data to perform differential gene expression and overall survival with different options.
Differential expression analyses and correlation analysis by selecting tumour, clinical features, gene and miRNA
DESeq2 Analysis Differential Expression Analysis Single Tumor Pan-Cancer Differential Expression Analysis
Differential expression analysis available by selecting tumour, clinical features and protein name
Differential Expression Analysis Single Tumor Pan-Cancer Differential Expression Analysis
Analysis with mutational data by selecting the tumour or gene of interest
Tumour Mutation Analysis Oncoplot Somatic Interaction Analysis Gene Mutation Analysis Differential Expression for Mutated Status - Deseq2 Differentially Mutated Gene by Clinical Feature
Survival analysis with mutational, transcriptomic and proteomic data by tumour and clinical characteristics
Overall Survival Overall Survival with Pathway Activity Score Overall Survival with Gene Mutation Status
Cell mixture deconvolution to estimates the proportions of different cell types in a mixed sample by using gene expression
Cell-mixture Deconvolution Correlation Cell Type and Pathways